Fmriprep

-------------------------------
Hotfix release intended for Singularity users, amending the previous iteration
that didn't fix the problem (1510) effigies.

------------------------------
Hotfix release intended for Singularity users. For further detail, please see
`1500 <https://github.com/nipreps/fmriprep/issues/1500>`__.

------------------------
We start the 1.3.x series including a few bugfixes, housekeeping duty and a refactors
to leverage `sMRIPrep <https://github.com/nipreps/smriprep>`__ (which is a fork of
fMRIPrep's anatomical workflow), pybids>=0.7 for querying dataset, and
`TemplateFlow <https://github.com/templateflow>`__ for handling standard spaces.

* FIX: Bad ``fsnative`` replacement in CIfTI workflow (1476) oesteban
* FIX: Avoid warning when generating boilerplate (1464) oesteban
* MAINT: resolves 1485 : patch fmriprep-docker automount for use with Python 3.7 (1486) rciric
* RF: Use anatomical workflows from sMRIPrep (1482) oesteban
* MAINT: Update sentry-sdk (1490) chrisfilo
* ENH: Remaining TemplateFlow integrations (1494) oesteban
* MAINT: Update to keep up with nipreps/niworkflows299 (1496) oesteban
* FIX: Updating bids-validator to 1.1.3 (1498) chrisfilo

1.2.x series (January 2019)
===========================

--------------------------
Hotfix release of version 1.2.6, pinning niworkflows to a release version (instead
of the development branch, since 1459) and including to bugfixes.

* PIN: NiWorkflows 0.5.2.post7 (`1bf4a21 <https://github.com/nipreps/fmriprep/commit/1bf4a21cce62c4330510a9a8ae50db876fbc23b0>`__).
* FIX: Bad ``fsnative`` replacement in CIfTI workflow (1476) oesteban
* FIX: Avoid warning when generating boilerplate (1464) oesteban

------------------------
This is a bug fix release in the 1.2 series. Probably the most noticeable
improvement is the restoration of auto-generated content in the documentation.

Additionally, FreeSurfer ``aparc``/``aseg`` segmentations are now sampled to all
output spaces.

For any users importing fMRIPrep interfaces, many of these have been moved to
the niworkflows package.

With thanks to Nir Jacoby and Hrvoje Stojic for contributions.

* FIX: Use keyword arguments for Sentry breadcrumb reporting (1441) chrisfilo
* FIX: Verify proc file exists before reading (1454) effigies
* ENH: Only report participants with errors (1437) effigies
* ENH: Resample aparc/aseg into specified output spaces (1401) nirjacoby
* ENH: Copy BibTeX file to log directory for LaTeX users (1446) hstojic
* RF: Use niworkflows upstreamed interfaces and utilities (1438) oesteban
* DOC: Fix documentation build (1451) oesteban
* DOC: Fix ReadTheDocs builds (1459) effigies
* MAINT/DOC: Clean-up ``__about__``, update with Nat Meth (1445) oesteban
* MAINT: Make sure Python 3.7.1 is installed (1452) oesteban
* MAINT: Dev status to beta, bump copyright year (1468) effigies

------------------------
Hotfix release.

* FIX: Breadcrumb reporting (1435) chrisfilo