Fmriprep

---------------------
This release comes with many updates to the documentation, a more lightweight
``SignalExtraction``, a new dynamic boilerplate and some new features from
Nipype.

* ENH: Use upstream ``afni.TShift`` improvements (1160)
* PIN: Nipype 1.1.1 (65078c9)
* ENH: Dynamic citation boilerplate (1024)
* ENH: Check Command Line dependencies before running (1044)
* ENH: Reimplement ``SignalExtraction`` (1170)
* DOC: Update copyright year to 2018 (1224)
* ENH: Enable ``-u`` (docker user/userid) flag in wrapper (1223)
* FIX: Corrects Dockerfile ``WORKDIR``. (1218)
* ENH: More specific errors for missing echo times (1221)
* ENH: Change ``WORKDIR`` of Docker image (1204)
* DOC: Update documentation related to contributions (1187)
* DOC: Additions to include before responding to reviews of the pre-print (1195)
* DOC: Improving documentation on using Singularity (1063)
* DOC: Add OHBM 2018 poster, presentation (1198)
* ENH: Replace ``InvertT1w`` with upstream ``Rescale(invert=True)`` (1161)

--------------------
This release incorporates Nipype improvements that should reduce the
chance of hanging if tasks are killed for excessive resource consumption.

Thanks to Elizabeth DuPre for documentation updates.

* DOC: Clarify how to reuse FreeSurfer derivatives (1189)
* DOC: Improve command line option documentation (1186, 1080)
* MAINT: Update core dependencies (1179, 1180)

--------------------
* ENH: Pre-cache DKT31 template in Docker image (1159)
* MAINT: Update core dependencies (1163)

--------------------
* ENH: Use Reorient interface included upstream in nipype (1153)
* FIX: Refine BIDS queries to avoid indexing derivatives (1141)
* DOC: Clarify outlier columns (1138)
* PIN: Update to niworkflows 0.4.0 and nipype 1.0.4 (1133)

1.0.x series (May 2018)
=======================

---------------------
* DOC: Add lesion masking during registration (1113)
* FIX: Patch ``boldbuffer`` for ME (1134)

---------------------
With thanks to ZhifangYe for contributions

* FIX: Non-invertible transforms bringing parcellation to BOLD (1130)
* FIX: Bad connection for ``--medial-surface-nan`` option (1128)