Fmriprep

Latest version: v25.0.0

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20.0.0

As described in the `Contributor Guidelines
<https://github.com/nipreps/fmriprep/blob/d65cfdd80443c5ca779680b1087d14f189e8ceb5/CONTRIBUTING.md#publications>`__, anyone
listed as developer or contributor may write and submit manuscripts regarding
*fMRIPrep*.
To do so, please move the author(s) name(s) to the front of the following list.

Markiewicz, Christopher J.\ :sup:`1`\ ; DuPre, Elizabeth\ :sup:`2`\ ; Goncalves, Mathias\ :sup:`1`\ ; Kent, James D.\ :sup:`3`\ ; Ciric, Rastko\ :sup:`1`\ ; Salo, Taylor\ :sup:`4`\ ; de la Vega, Alejandro\ :sup:`5`\ ; Finc, Karolina\ :sup:`6`\ ; Feingold, Franklin\ :sup:`1`\ ; Urchs, Sebastian\ :sup:`2`\ ; Blair, Ross W.\ :sup:`1`\ ; Erramuzpe, Asier\ :sup:`7`\ ; Valabregue, Romain\ :sup:`8`\ ; Jacoby, Nir\ :sup:`9`\ ; Lurie, Daniel J.\ :sup:`10`\ ; Heinsfeld, Anibal S.\ :sup:`11`\ ; Halchenko, Yaroslav O.\ :sup:`12`\ ; Sneve, Markus H.\ :sup:`13`\ ; Devenyi, Grabriel A.\ :sup:`14`\ ; Liem, Franz\ :sup:`15`\ ; Gomez, Daniel E. P.\ :sup:`16`\ ; Adebimpe, Azeez\ :sup:`17`\ ; Velasco, Pablo\ :sup:`18`\ ; Groen, Iris I. A.\ :sup:`19`\ ; Ma, Feilong\ :sup:`12`\ ; Rivera-Dompenciel, Adriana\ :sup:`3`\ ; Amlien, Inge K.\ :sup:`13`\ ; Cieslak, Matthew\ :sup:`17`\ ; Ghosh, Satrajit S.\ :sup:`20, 21`\ ; Isik, Ayse Ilkay\ :sup:`22`\ ; Moodie, Craig A.\ :sup:`1`\ ; Naveau, Mikaël\ :sup:`23`\ ; Satterthwaite, Theodore D.\ :sup:`17`\ ; Sitek, Kevin R.\ :sup:`24`\ ; Stojić, Hrvoje\ :sup:`25`\ ; Thompson, William H\ :sup:`1`\ ; Tooley, Ursula A.\ :sup:`26`\ ; Wright, Jessey\ :sup:`1`\ ; Ye, Zhifang\ :sup:`27`\ ; Gorgolewski, Krzysztof J.\ :sup:`1`\ ; Poldrack, Russell A.\ :sup:`1`\ ; Esteban, Oscar\ :sup:`1`\ .

Affiliations:

1. Department of Psychology, Stanford University
2. Montreal Neurological Institute, McGill University
3. Neuroscience Program, University of Iowa
4. Department of Psychology, Florida International University
5. University of Texas at Austin
6. Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń
7. Computational Neuroimaging Lab, BioCruces Health Research Institute
8. CENIR, INSERM U1127, CNRS UMR 7225, UPMC Univ Paris 06 UMR S 1127, Institut du Cerveau et de la Moelle épinière, ICM, F-75013, Paris, France
9. Department of Psychology, Columbia University
10. Department of Psychology, University of California, Berkeley
11. Child Mind Institute
12. Dartmouth College: Hanover, NH, United States
13. Center for Lifespan Changes in Brain and Cognition, University of Oslo
14. Department of Psychiatry, McGill University
15. URPP Dynamics of Healthy Aging, University of Zurich
16. Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen
17. Perelman School of Medicine, University of Pennsylvania, PA, USA
18. Center for Brain Imaging, New York University
19. Department of Psychology, New York University, NY, USA
20. McGovern Institute for Brain Research, MIT, MA, USA
21. Department of Otolaryngology, Harvard Medical School, MA, USA
22. Max Planck Institute for Empirical Aesthetics
23. Cyceron, UMS 3408 (CNRS - UCBN), France
24. Speech & Hearing Bioscience & Technology Program, Harvard University
25. Max Planck UCL Centre for Computational Psychiatry and Ageing Research, University College London
26. Department of Neuroscience, University of Pennsylvania, PA, USA
27. State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University

1.5.x series (September 2019)
=============================

2.2.0

1.5.10

-----------------------
Bug-fix release in the 1.5.x series.

This release fixes a bug for **phase-difference fieldmaps that are not in RAS+ orientation**.
The bug presented as an error if the orientation was reordered relative to RAS+ (for example,
AIL+) and the swapped dimensions were not of the same size.
Otherwise, the bug introduced a poor masking of the phase difference map, and could be quite subtle
if the original orientation was LAS+.
Runs of fMRIPrep that used other susceptibility distortion correction (SDC) methods are not
currently considered problematic.

This bug affects all previous versions of fMRIPrep, as well as versions 20.0.0-20.0.5.

* FIX: Do not reorient magnitude images (`nipreps/sdcflows98`_)

.. _`nipreps/sdcflows98`: https://github.com/nipreps/sdcflows/pull/98

1.5.9

-------------------------
Bug-fix release in the 1.5.x series.

This release fixes a bug for some phase maps generated by Philips. A full fix with better handling
of all phase maps will be available in an upcoming minor release (20.0 or 20.1), but this should permit
users who are processing with 1.5.x to resolve this issue in a way that does not affect phase maps
unaffected by the bug.

* FIX: Center phase maps around central mode, avoiding FoV-related outliers (nipreps/sdcflows89)

1.5.8

------------------------
Bug-fix release in the 1.5.x series.

* FIX: SyN SDC logic failing in ``--force-syn`` cases (1951)

1.5.7

------------------------
Bug-fix release in the 1.5.x series.

This release fixes a bug specifically for T1w images with dimensions ≤256 voxels
but a field-of-view >256mm.

* FIX: Calculate FoV with shape and zooms (nipreps/smriprep161)

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