Fmriprep

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Bug-fix release in the 1.5.x series.

This release fixes a bug for **phase-difference fieldmaps that are not in RAS+ orientation**.
The bug presented as an error if the orientation was reordered relative to RAS+ (for example,
AIL+) and the swapped dimensions were not of the same size.
Otherwise, the bug introduced a poor masking of the phase difference map, and could be quite subtle
if the original orientation was LAS+.
Runs of fMRIPrep that used other susceptibility distortion correction (SDC) methods are not
currently considered problematic.

This bug affects all previous versions of fMRIPrep, as well as versions 20.0.0-20.0.5.

* FIX: Do not reorient magnitude images (`nipreps/sdcflows98`_)

.. _`nipreps/sdcflows98`: https://github.com/nipreps/sdcflows/pull/98

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Bug-fix release in the 1.5.x series.

This release fixes a bug for some phase maps generated by Philips. A full fix with better handling
of all phase maps will be available in an upcoming minor release (20.0 or 20.1), but this should permit
users who are processing with 1.5.x to resolve this issue in a way that does not affect phase maps
unaffected by the bug.

* FIX: Center phase maps around central mode, avoiding FoV-related outliers (nipreps/sdcflows89)

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Bug-fix release in the 1.5.x series.

* FIX: SyN SDC logic failing in ``--force-syn`` cases (1951)

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Bug-fix release in the 1.5.x series.

This release fixes a bug specifically for T1w images with dimensions ≤256 voxels
but a field-of-view >256mm.

* FIX: Calculate FoV with shape and zooms (nipreps/smriprep161)

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Bug-fix release in the 1.5.x series.

* FIX: Include all functional runs in reports, establish consistent ordering (1937)
* FIX: Use SyN-SDC if --use-syn-sdc and --ignore fieldmaps are used (1942)

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Bug-fix release in the 1.5.x series.

* FIX: Correctly select volumetric spaces for carpetplot (1932) effigies
* FIX: Constrain setuptools for Python 2.7 installs of fmriprep-docker (1933) effigies