Fmriprep

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* FIX: Do not detrend CSF/WhiteMatter/GlobalSignal (1058)

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* TST: Re-run ds005 with only one BOLD run (1048)
* FIX: Patch subject_summary in reports (1047)

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With thanks to danlurie for contributions.

* FIX: Connect inputnode to SDC for pepolar images (1046)
* FIX: Pass ``ref_file`` to STC check (1038)
* DOC: Add BBR fallback to user docs. (1036)
* ENH: Revise resampling grid for template outputs (1040)
* MAINT: DataSinks within their workflows (1021)
* ENH: Add FLAIR pial refinement support (829)
* MAINT: Upgrade to pybids 0.5 (1027)
* MAINT: Refactor fieldmap heuristics (1017)
* FIX: Use metadata to select shortest echo as ref_file (1018)
* ENH: Adopt versioneer to compose version names (1007)
* ENH: Handle first echo separately for ME-EPI (891)

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With thanks to mgxd and naveau for contributions.

* FIX: ROIs Plot and output brain masks consistency (1002)
* FIX: Init flirt with qform (1003)
* DOC: Prepopulate tag when posting neurostars questions. (987)
* FIX: Update fmap.py : import _get_pe_index in get_ees (984)
* FIX: Argparse action (985)

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* ENH: Output ``aseg`` and ``aparc`` in T1w and BOLD spaces (957)
* FIX: Write latest BOLD mask out (space-T1w) (978)
* PIN: Updating niworkflows to 0.3.1 (962)
* FIX: Robuster BOLD mask (966)

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* FIX: Bad connection in phasediff-fieldmap workflow (950)
* PIN: niworkflows-0.3.1-dev (including Nipype 1.0.0!)
* ENH: Migrate to CircleCI 2.0 and workflows (943)
* ENH: Improvements to CLIs (native & wrapper) (944)
* FIX: Rerun tCompCor interface in case of MemoryError (942)