Resolwe

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Fixed
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- Filter out deleted annotation values in viewset

Changed
-------
- **BACKWARD INCOMPATIBLE:** Return all version of processess on process
endpoint


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Changed
-------
- **BACKWARD INCOMPATIBLE:** Set ``BaseManager`` as default objects manager.
The manager supports objects versions by grouping them together by common
fields and returning only the one with the latest version from every group.
- **BACKWARD INCOMPATIBLE:** Set ``PermissionManager`` as default manager for
objects with permissions
- Restrict processing container from using service account permissions
- Support creating multiple entries at once in create mixin
- Rename ``modified`` field in the ``AnnotationValue`` model to ``created``
- Set annotation method on entity accepts optional contributor as argument

Added
-----
- Add ``version`` field to the ``AnnotationField`` model
- Add ``contributor`` field to the ``AnnotationValue`` model
- Add version of base managers without versioning support
- Add abstract base classes for annotation fields
- Add ``annotate_status`` to collection and entity queryset

Fixed
-----
- Use ``all_objects`` manager in related lookups in viewsets
- Veriy change when moving data to another ``entity``


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Changed
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- Change fallback for storage resource from 200GB to 10GB


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Added
-----
- Allow overriding the number of max metrics points that are exported in the
same batch via ``RESOLWE_METRICS_EXPORT_SIZE`` environmental
variable(defaults to 1000)

Changed
-------
- Move metrics endpoint configuration to Django settings and read it from
``RESOLWE_METRICS_ENDPOINT`` environmental variable
``RESOLWE_LISTENER_METRICS_ENDPOINT`` environmental variable
- Remove attribute ``data_id`` from listener metrics


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Added
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- Add ``upload_credentials`` endpoint
- Mark endpoint ``upload_config_deprecated`` as deprecated and to be removed
after ``1. 1. 2025``
- Add object iteration to the listener protocol
- Add mapping for ``PositiveBigIntegerField`` to python processes
- Add metrics reporting to the listener service

Changed
-------
- Change ``UploadConfig`` type to ``APIView``
- Emit auditlog in background task
- Use default value ``False`` for ``skip_missing_interpreters`` in tox.ini file


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Changed
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- Bump requirements version
- Upgrade base images to Fedora 40 and Ubuntu 24.04
- Use ``pyproject.toml`` instead of ``setup.py``
- Merge ``Authenticator`` class with ``ZMQAuthenticator`` and allow any client
with the encryption key to connect to the listener service. The client is
rejected if it accesses the data object it does not have the permissions for.


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