Fixed tiny bug when printing dry run output in `bin/make-consensus.py`.
4.0.10
Updated TravisCI config and README build status badge URL.
4.0.9
Not secure
Moved some code out of dark/civ/proteins.py into dark/genbank.py to make it more useful to others.
4.0.8
Not secure
Added `DistanceMatrix` class to `dark/sam.py` for computing distances between references according to which reads match both (and how well, if an alignment score tag is given).
4.0.7
Not secure
Color overall number of reads per pathogen in HTML output.
4.0.6
Not secure
Fixed subtle bug introduced into `bin/filter-fasta.py` due to a code reordering.