Added `bin/fasta-count-chars.py` script. Fixed argument bug in `run-bowtie2.py` print statement.
4.0.12
Not secure
Fixed another tiny bug when printing dry run output in `bin/make-consensus.py`.
4.0.11
Not secure
Fixed tiny bug when printing dry run output in `bin/make-consensus.py`.
4.0.10
Updated TravisCI config and README build status badge URL.
4.0.9
Not secure
Moved some code out of dark/civ/proteins.py into dark/genbank.py to make it more useful to others.
4.0.8
Not secure
Added `DistanceMatrix` class to `dark/sam.py` for computing distances between references according to which reads match both (and how well, if an alignment score tag is given).