Fixed silly bug in alignment filtering code that was somehow not tested.
3.1.26
Not secure
Added `--percentagePositiveCutoff` argument to `alignment-panel-civ.py` and `noninteractive-alignment-panel.py` and all that implies, down to reading DIAMOND output with the `ppos` value, storing it, restoring it, and filtering on it in `dark.alignments.ReadsAlignmentsFilter`, plus tests.
3.1.25
Not secure
Added `--minProteinCount` argument to `proteins-to-pathogens-civ.py` and `proteins-to-pathogens.py`
3.1.24
Not secure
Fixed a tiny Python <= 3.6 test output difference.
3.1.23
Fixed trivial Python2 incompatibility.
3.1.22
Not secure
Added `--percentageIdenticalCutoff` argument to `alignment-panel-civ.py` and `noninteractive-alignment-panel.py` and all that implies, down to reading DIAMOND output with the `pident` value, storing it, restoring it, and filtering on it in `dark.alignments.ReadsAlignmentsFilter`, plus tests.