Fixed [630](https://github.com/acorg/dark-matter/issues/630) to deal with non-hard-clipped queries that have a CIGAR string that indicates they have been clipped.
3.0.37
Not secure
Add a `--titlesJSONFile` option to `noninteractive-alignment-panel.py`.
3.0.36
Not secure
Added `whitelistFile` and `blacklistFile` to `ReadsAlignmentsFilter` class in `dark/alignments.py`.
3.0.35
Not secure
Fixed small bug in `filter-hits-to-fasta.py`.
Added flushing of intermediate output in `noninteractive-alignment-panel.py`.
3.0.34
Not secure
Factored common SAM filtering code out into `dark.sam.SAMFilter`. Split common FASTA command-line options into those for filtering (this is just inclusion/exclusion) and those for editing (which change the FASTA records in some way).