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Latest version: v5.0.31

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Page 23 of 50

Not secure

Added `--removePrimersFromBedFile` option to `run-bowtie2.py`. Fixed small
bug in `codon-distance.py`.

Not secure

Added an option to trim primers using <b>ivar trim</b> to `run-bowtie2.py`.

`sam-coverage.py` now prints the min and max coverage per alignment too.

Not secure

Added indexing to `callHaplotypesBcftools` in `bowtie2.py`.

Not secure

Fixed errors from new version of flake8.

Added `--callHaplotypesBcftools` to `bowtie2.py`.

Has known vulnerabilities

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