Added `--sort` option to `bin/fasta-identity-table.py`.
4.0.40
Not secure
Fixed small bug in `Reads.temporalBaseCounts`. Improved identity calculation in `fasta-identity-table.py`.
4.0.39
Not secure
Pass the `showNoCoverage` option value to the making of the HTML table in `bin/fasta-identity-table.py`.
4.0.38
Not secure
Added `--noNoCoverageLocations`, `--noCoverageChars`, and `--gapChars` option to `bin/compare-sequences.py`. Fixed identity calculation bug in `bin/fasta-identity-table.py` due to not including gaps resulting from the pairwise alignment into the calculation.
4.0.37
Not secure
Added `noCoverageChars` option to `compareDNAReads` and `includeNoCoverageLocations` option to `matchToString`.
4.0.36
Not secure
Make `compareDNAReads` more forgiving of unexpected characters in a DNA sequence (specifically to deal with '?' that is used by Geneious to indicate lack of coverage).