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Latest version: v4.0.89

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Page 5 of 44

Nothing.

Removed `find-hits.py` from setup.py

Added type hints to scory.py and some to reads.py.

Removed `bin/find-hits.py`. Fixed matplotlib deprecation warnings. Ran black.

Backed out 4.0.59 and 4.0.60 changes.

More index checking in `bin/sam-coverage-depth.py`.

Has known vulnerabilities

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