Make `NCBISequenceLinkURL` raise a more informative `IndexError` when it cannot extract the wanted field.
3.0.71
Not secure
Fixed stupid typo in `proteins-to-pathogens.py`.
3.0.70
Not secure
Added `titleRegex` and `negativeTitleRegex` to `ProteinGrouper` class and `--titleRegex` and `--negativeTitleRegex` arguments to `proteins-to-pathogens.py`.
3.0.69
Not secure
Added `--title` and `--preamble` args to output from `proteins-to-pathogens.py`. Fixed `ProteinGrouper` HTML NCBI protein link and added genome link. Added positive and negative filtering by regex to `TitlesAlignments` and tests. Improved NCBI link generation and tests. >>>>>>> master
3.0.68
Not secure
Refactored `SAMFilter` to allow filtering alignments in pileups. Added `bin/sam-coverage.py`.
3.0.67
Not secure
Use `dark.utils.StringIO` everywhere as it can be used as a context manager in Python 2.