Dark-matter

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3.0.54

Not secure
`convert-diamond-to-sam.py` was putting the incorrect (AA, not nucleotide)
reference length into the SAM output. Introduced some spaces for easier
table layout into the HTML generated by `fasta-identity-table.py` when
called by `compare-consensuses.py`.

3.0.53

Not secure
Fixed [650](https://github.com/acorg/dark-matter/issues/650),
exception in `SAMFilter` when quality is `*` in a SAM file.

3.0.52

Not secure
Added hard-clipping to CIGAR in SAM created by `convert-diamond-to-sam.py`.

3.0.51

Not secure
Use `from six import StringIO` to avoid a PY2/3 incompatibility.

3.0.50

Not secure
Added `bin/convert-diamond-to-sam.py` script to convert DIAMOND output
format 6 to SAM.

3.0.49

Not secure
Added `btop2cigar` to `dark.btop` to convert BTOP strings to CIGAR strings.

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