Dark-matter

Latest version: v4.0.89

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Page 22 of 44

Not secure

Fixed stupid argument mixup in calling `bcftools consensus` in
`make-consensus.py`.

Not secure

Doubled some undoubled percentages in format string in `make-consensus.py`.

Not secure

Added `--maskNoCoverage` option to `make-consensus.py`.

Not secure

Added `sequenceToRegex` function to `dark/dna.py`.

Not secure

Added `fasta-variable-sites.py` script.

Not secure

Improve the printing of ambiguous sites to not show gaps in
`compare-sequences.py`.

Has known vulnerabilities

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