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Page 45 of 48

Not secure

Updated ViralZone search URL in `dark/proteins.py`.

Not secure

Added `--sites` argument to `compare-dna-sequences.py` and corresponding
`offsets` argument to the underlying function.

Not secure

Fixed bug that got introduced when doing `3.0.17 June 14, 2018`.

Not secure

Fixed bug that got introduced when doing `3.0.16 June 14, 2018`.

Not secure

Made a change in `dark/proteins.py`, to make the `minProteinFraction` work
on a per sample basis, not per pathogen.

Not secure

Fixed another bug (unreference variable) in `graphics.py` that crept in in
version `3.0.10 June 11, 2018`.

Has known vulnerabilities

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