Made a change in `dark/dna.py`, to make `identicalMatchCount` only count non- ambiguous matches. Added testfunction `testMatchwithIdenticalAmbuguity`.
3.0.25
Not secure
Added TravisCI Slack notifications.
3.0.24
Not secure
Made `noninteractive-alignment-panel.py` option `--outputDir` to be required. Added error message for this in `graphics.py`.
3.0.23
Not secure
Changed the way reference sequence insertions are stored in a `dark.sam.PaddedSAM` instance to make it possible to tell which query sequences caused reference insertions.
3.0.22
Not secure
Made `dark/sam.py` properly deal with secondary alignments that are missing a SEQ.